Chapter II: Modeling Methods
A mathematical model of mormyrid ELL granular cell electroresponsiveness was constructed using the NEURON simulator (Hines and Carnevale, 1997). Due to the electrotonically compact structure of this cell type, a single compartment model (soma) was built with uniform ionic and input conductances. Ionic conductances for Na+, K+, Ca2+, a nonspecific cation leak, and a GABAA leak current were borrowed from DAngelos model of rat cerebellar granule cells (DAngelo et al., 2001). Synaptic inputs were modeled by direct current injection for electrical synapses, and by biologically realistic values of maximum conductance, rise time, decay time, and reversal potential for NMDA, AMPA, and GABAA mediated currents.
Simulation of neuronal electrical properties was accomplished by solving a set of differential equations describing membrane voltage, intracellular Ca2+ concentration, and ion channel gating dynamics. Resting potential of the cell membrane was set to 65mV, and voltage changes were determined by the following equation:
where V is membrane potential, t is time, Cm is membrane capacitance, gi is ionic conductance, Vi is reversal potential, and i(inj) is injected current. Membrane conductances were represented using Hodgkin-Huxley-like models (Hodgkin and Huxley, 1952) of the type:
gi = Gmax xizi yi (2)
where Gmax is the maximum ionic conductance, xi and yi are state variables (probabilities ranging from 0 to 1) for a gating particle, and zi is the number of such gating particles in ionic channel i. The variables x and y were related to the first-order rate constants a and b by the equations:
x = a x / (a x + b x), y = a y / (a y + b y) (3)
t x = 1 / (a x + b x), t y = 1 / (a y + b y) (4)
where a and b are functions of voltage. The equations used to parameterize a and b and the state variables x,t x, y, and t y for different ionic channels (DAngelo et al., 2001) are shown in Table 1. The state kinetic variables were:
d x/d t = (x°-x) / t x (5)
d y/d t = (y°-y) / t y (6)
The model included AMPA, NMDA, and GABAA synaptic conductances, and an electrical synapse modeled with NEURONs built-in Iclamp point process. A leakage current (DAngelo et al., 2001), and voltage-dependent Na+, Ca2+, and K+ conductances were also included (DAngelo et al., 2001; see Table 1).
All ionic currents included in the model were previously shown to be present in mature rat cerebellar granule cells (DAngelo et al., 1997). These currents were used in the absence of experimentally verified ionic conductances in the granular cells of mormyrid ELL, with the assumption of homology between these two groups of granule-type cells. Gating kinetics, taken from DAngelo et al. (2001), were previously adjusted to account for differences between experimental temperature and simulated temperature (Tsim=30o C).